The Squads |
| 1. Roger Freestone | 2. Neil Whitworth |
| 2. Lee Jenkins | 3. Graeme Power |
| 3. Leon Hylton (Loan - Aston Villa) | 4. Justin Walker |
| 4. Kristian O'Leary | 5. Chris Curran |
| 5. Jason Smith | 6. George Pilkington (Loan - Everton) |
| 7. Andrew Mumford | 7. Scott Hiley |
| 8. Matthew Murphy | 8. Kwame Ampadu |
| 9. James Thomas | 9. Sean McCarthy |
| 10. Steve Watkin | 10. Gareth Sheldon |
| 11. Jonathan Coates | 11. Andy Roscoe |
| 12. Alan Tate (Loan - Man Utd) | 12. Paul Harries |
| 14. Marc Richards (Loan - Blackburn) | 13. Geoff Breslan |
| 15. Kevin Nugent | 14. Steve Flack |
| 17. Terry Evans | 15. Barry McConnell |
| 18. Gareth Phillips | 16. Santos Gaia |
| 19. John Williams | 17. Carl Pettefer (Loan - Portsmouth) |
| 20. Michael Howard | 18. Adrian Whitbread |
| 21. Neil Sharp | 19. Martin Thomas |
| 23. Kieron Durkan | 20. Reinier Moore |
| 24. Lenny Johnrose | 21. Matthew Lock |
| 25. Jamie Wood | 22. Adam Virgo (Loan - Brighton) |
| 26. Richard Duffy | 23. Leslie Afful |
| 27. Roberto Martinez | 24. Stuart Fraser |
| 28. Stuart Jones | 25. Don Goodman |
| 29. Antonio Corbisiero | 26. James Coppinger |
| 30. Jamie Rewbury | 27. Glenn Cronin |
| 32. Craig Stiens (Loan - Leeds United) | 28. Shaun Goff |
| 33. Neil Cutler (Loan - Stoke City) | 29. Sebastien Scalise |
| 35. Leon Britton (Loan - West Ham) | 30. Kevin Miller |
| 31. Sean Devine |
| 32. Christopher Todd |
| 33. Alex Watson |
| 34. Lee Barnard (Loan - Tottenham) |
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